The school is managed by the School Management Committee (SMC) and operated by the Council of Heep Yunn School, which is also the sponsoring body of the primary and kindergarten sections. The SMC determines the school policy and major decisions of the school administration. The internal management is headed by the School-based Administration Committee, which is chaired by the Headmistress.
Staff opinions and suggestions voiced at general staff meetings or departmental meetings are considered, discussed and fine-tuned at the regular meetings before they are recommended to the SMC for endorsement.
Once endorsed, the School-based Administration Committee is responsible for executing such decisions with the assistance of the heads of departments and functional committees.
